Multifun Classification
- 1 Metabolism
- 1.1 Carbon compound utilization
- 1.1.1 Carbohydrates/Carbon compounds
- 1.1.1.1 D-allose cataboslism
- 1.1.1.2 2,5-ketogluconate metabolism
- 1.1.1.3 D-arabinose catabolism
- 1.1.1.4 D-galactarate catabolism
- 1.1.1.5 D-galactorunate catabolism
- 1.1.1.6 D-glucarate catabolism
- 1.1.1.7 D-glucuronate catabolism
- 1.1.1.8 L-arabinose catabolism
- 1.1.1.9 L-idonate catabolism
- 1.1.1.10 L-lyxose metabolism
- 1.1.1.11 Fucose catabolism
- 1.1.1.12 Galactitol catabolism
- 1.1.1.13 Galactonate catabolism
- 1.1.1.14 Lactose degradation
- 1.1.1.15 Mannose catabolism
- 1.1.1.16 Rhamnose catabolism
- 1.1.1.17 Sorbitol degradation
- 1.1.1.18 Trehalose degradation, low osmolarity
- 1.1.1.19 Xylose catabolism
- 1.1.1.20 Glycol degradation
- 1.1.1.21 Mannitol degradation
- 1.1.1.22 Ribose degradation
- 1.1.1.23 Galactose degradation
- 1.1.1.24 Sorbose degradation
- 1.1.1.25 L-ascorbate degradation
- 1.1.1.26 2-O-alpha-mannosyl-D-glycerate degradation
- 1.1.2 Fatty acids (fatty acid oxidation)
- 1.1.3 Amino acids
- 1.1.3.1 L-alanine degradation
- 1.1.3.2 L-serine degradation
- 1.1.3.3 Arginine catabolism
- 1.1.3.4 Glutamate degradation
- 1.1.3.5 Glycine cleavage
- 1.1.3.6 Proline utilization
- 1.1.3.7 Threonine catabolism
- 1.1.3.8 Tryptophan utilization
- 1.1.3.9 L-cysteine catabolism
- 1.1.3.10 Lysine cleavage
- 1.1.3.11 Histidine degradation
- 1.1.3.12 Leucine degradation
- 1.1.3.13 Methionine degradation
- 1.1.3.14 Valine degradation
- 1.1.3.15 Phenylalanine, tyrosine degradation
- 1.1.4 Amines
- 1.1.5 Others
- 1.1.1 Carbohydrates/Carbon compounds
- 1.2 Macromolecule degradation
- 1.3 Energy metabolism (carbon)
- 1.4 Energy production/transport
- 1.5 Building block biosynthesis
- 1.5.1 Amino acids
- 1.5.1.1 Glutamate
- 1.5.1.2 Glutamine
- 1.5.1.3 Arginine
- 1.5.1.4 Proline
- 1.5.1.5 Aspartate
- 1.5.1.6 Asparagine
- 1.5.1.7 Lysine, diaminopimelate
- 1.5.1.8 Threonine
- 1.5.1.9 Methionine
- 1.5.1.10 Glycine
- 1.5.1.11 Serine
- 1.5.1.12 Cysteine
- 1.5.1.13 Phenylalanine
- 1.5.1.14 Tyrosine
- 1.5.1.15 Tryptophan
- 1.5.1.16 Histidine
- 1.5.1.17 Alanine
- 1.5.1.18 Isoleucine/valine
- 1.5.1.19 Leucine
- 1.5.1.20 Chorismate
- 1.5.1.21 Homoserine
- 1.5.2 Nucleotide
- 1.5.3 Cofactor, small molecule carrier
- 1.5.3.1 Biotin
- 1.5.3.2 Folic acid
- 1.5.3.3 Lipoate
- 1.5.3.4 Molybdenum (molybdopterin)
- 1.5.3.5 Coenzyme A
- 1.5.3.6 Pyridoxine (vitamin B6)
- 1.5.3.7 Nicotinamide adenine dinucleotide (NAD)
- 1.5.3.8 Thiamine (Vitamin B1)
- 1.5.3.9 Riboflavin (Vitamin B2), FAD, FMN
- 1.5.3.10 Glutathione
- 1.5.3.11 Menaquinone (MK), ubiquinone (Q)
- 1.5.3.12 Heme, porphyrine
- 1.5.3.13 Cobalamin (Vitamin B12)
- 1.5.3.14 Enterochelin (enterobactin)
- 1.5.3.15 Chrysobactin
- 1.5.3.16 Achromobactin
- 1.5.3.19 Isoprenoid biosynthesis
- 1.5.3.20 Tetrahydrobiopterin biosynthesis
- 1.5.3.21 Pyochelin biosynthesis
- 1.5.4 Fatty acid and phosphatidic acid
- 1.5.1 Amino acids
- 1.6 Macromolecules (cellular constituent) biosynthesis
- 1.6.1 Phospholipid
- 1.6.2 Colanic acid (M antigen)
- 1.6.3 Lipopolysaccharide
- 1.6.4 Enterobacterial common antigen (surface glycolipid)
- 1.6.5 K antigen
- 1.6.6 Osmoregulated periplasmic glucan
- 1.6.7 Peptidoglycan (murein)
- 1.6.9 Polysaccharides, cytoplasmic
- 1.6.10 Lipoprotein
- 1.6.11 Glycoprotein
- 1.6.12 Flagella
- 1.6.13 Fimbria, pili, curli
- 1.6.15 Large molecule carriers
- 1.6.16 Cellulose biosynthesis
- 1.7 Central intermediary metabolism
- 1.7.1 Unassigned reversible reactions
- 1.7.2 Glyoxylate bypass
- 1.7.3 Pentose phosphate shunt, non-oxidative branch
- 1.7.6 Glycerol metabolism
- 1.7.7 Galactose metabolism
- 1.7.8 Gluconeogenesis
- 1.7.9 Misc.glucose metabolism
- 1.7.10 Sugar nucleotide biosynthesis, conversions
- 1.7.12 Amino sugar conversions
- 1.7.13 Amino acid conversion
- 1.7.14 Polyamine biosynthesis
- 1.7.15 2'-deoxyribonucleotide/ribonucleoside metabolism
- 1.7.17 Formyl-tetrahydrofolate biosynthesis
- 1.7.18 Betaine biosynthesis
- 1.7.19 Incorporation of metal ions
- 1.7.20 S-adenosyl methionine biosynthesis
- 1.7.21 Glyoxylate degradation
- 1.7.22 Carnitine metabolism
- 1.7.23 Methylglyoxal metabolism
- 1.7.24 Cyanate catabolism
- 1.7.25 Glycolate metabolism
- 1.7.26 Allantoin assimilation
- 1.7.27 Pyridoxal 5'-phosphate salvage
- 1.7.28 Pyruvate catabolism
- 1.7.29 Acetate catabolism
- 1.7.31 Aminobutyrate catabolism
- 1.7.32 Putrescine catabolism
- 1.7.33 Nucleotide and nucleoside conversions
- 1.7.34 Peptidoglycan (murein) turnover, recycling
- 1.7.35 Lactate oxidation
- 1.7.36 Trehalose biosynthesis
- 1.7.37 C1 assimilation, serine pathway
- 1.7.38 Methionine salvage pathway
- 1.8 Metabolism of other compounds
- 1.1 Carbon compound utilization
- 2 Information transfer
- 3 Regulation
- 3.1 Type of regulation
- 3.3 Genetic unit regulated
- 3.4 Trigger (some information added)
- 3.5 Trigger modulation (some information added)
- 4 Transport
- 4.1 Channel-type Transporters
- 4.1.A alpha-type channels
- 4.1.A.1 The Voltage-gated Ion Channel (VIC) Superfamily
- 4.1.A.8 The Major Intrinsic Protein (MIP) Family
- 4.1.A.11 The Chloride Channel (ClC) Family
- 4.1.A.22 The Large Conductance Mechanosensitive Ion Channel (MscL) Family
- 4.1.A.23 The Small Conductance Mechanosensitive Ion Channel (MscS) Family
- 4.1.A.46 The H+- or Na+-translocating Bacterial Flagellar Motor (Mot) Family
- 4.1.B Beta barrel porins (The Outer Membrane Porin (OMP) Functional Superfamily)
- 4.1.B.1 The General Bacterial Porin (GBP) Family
- 4.1.B.3 The Sugar Porin (SP) Family
- 4.1.B.9 The FadL Outer Membrane Protein (FadL) Family
- 4.1.B.10 The Nucleoside-specific Channel-forming Outer Membrane Porin (Tsx) Family
- 4.1.B.14 The Outer Membrane Receptor (OMR) Family
- 4.1.B.17 The Outer Membrane Factor (OMF) Family
- 4.1.B.21 The OmpG Porin (OmpG) Family
- 4.1.A alpha-type channels
- 4.2 Electrochemical potential driven transporters
- 4.2.A Porters (Uni-, Sym- and Antiporters)
- 4.2.A.1 The Major Facilitator Superfamily (MFS)
- 4.2.A.2 The Glycoside-Pentoside-Hexuronide (GPH):Cation Symporter Family
- 4.2.A.3 The Amino Acid-Polyamine-Choline (APC) Family
- 4.2.A.4 The Cation Diffusion Facilitator (CDF) Family
- 4.2.A.6 The Resistance-Nodulation-Cell Division (RND) Superfamily
- 4.2.A.7 The Drug/Metabolite Transporter (DMT) Superfamily
- 4.2.A.8 The Gluconate:H+ Symporter (GntP) Family
- 4.2.A.9 The Cytochrome oxidase biogenesis (Oxa1) Family
- 4.2.A.10 The 2-Keto-3-Deoxygluconate Transporter (KDGT) Family
- 4.2.A.13 The C4-Dicarboxylate Uptake (Dcu) Family
- 4.2.A.14 The Lactate Permease (LctP) Family
- 4.2.A.15 The Betaine/Carnitine/Choline Transporter (BCCT) Family
- 4.2.A.16 The Telurite-resistance/Dicarboxylate Transporter (TDT) Family
- 4.2.A.17 The Proton-dependent Oligopeptide Transporter (POT) Family
- 4.2.A.19 The Ca2+ :Cation Antiporter (CaCA) Family
- 4.2.A.20 The Inorganic Phosphate Transporter (PiT) Family
- 4.2.A.21 The Solute:Sodium Symporter (SSS) Family
- 4.2.A.23 The Dicarboxylate/Amino Acid:Cation (Na+ or H+) Symporter (DAACS) Family
- 4.2.A.25 The Alanine/Glycine:Cation symporter (AGCS) Family
- 4.2.A.26 The Branched Chain Amino Acid:Cation Symporter (LIVCS) Family
- 4.2.A.27 The Glutamate:Na+ ) Symporter (DAACS) Family
- 4.2.A.33 The NhaA Na+:H+ Antiporter (NhaA) Family
- 4.2.A.34 The NhaB Na+:H+ Antiporter (NhaB) Family
- 4.2.A.36 The Monovalent Cation:Proton Antiporter-1 (CPA1) Family
- 4.2.A.37 The Monovalent Cation:Proton Antiporter-2 (CPA2) Family
- 4.2.A.38 The K+ Transporter (Trk) Family
- 4.2.A.39 The Nucleobase:Cation Symporter-1 (NCS1) Family
- 4.2.A.40 The Nucleobase:Cation Symporter-2 (NCS2) Family
- 4.2.A.41 The Concentrative Nucleoside Transporter (CNT) Family
- 4.2.A.42 The Hydroxy/Aromatic Amino Acid Permease (HAAAP) Family
- 4.2.A.44 The Formate-Nitrite Transporter (FNT) Family
- 4.2.A.45 The Metal Ion Transporter (MIT) Family
- 4.2.A.47 The Divalent Anion:Na+ Symporter (DASS) Family
- 4.2.A.49 The Ammonium Transporter (Amt) Family
- 4.2.A.53 The Sulfate Permease (SulP) Family
- 4.2.A.55 The Manganese (Nramp) Fam.
- 4.2.A.58 The Phosphate:Na+ Symporter (PNaS) Family
- 4.2.A.61 The C4-dicarboxylate Uptake C (DcuC) Family
- 4.2.A.64 The Type V Secretory Pathway or Twin Arginine Targeting (Tat) Family
- 4.2.A.66 The Multi Antimicrobial Extrusion (MATE) Family
- 4.2.A.68 The p-Aminobenzoyl-glutamate Transporter (AbgT) Family
- 4.2.A.69 The Auxin Efflux Carrier (AEC) Family
- 4.2.A.72 The K+ uptake permease (KUP) family
- 4.2.A.75 The L-lysine exporter (LysE) family
- 4.2.A.76 The Resistance to Homoserine/Threonine (RhtB) Family
- 4.2.C Ion-gradient driven energizers
- 4.2.A Porters (Uni-, Sym- and Antiporters)
- 4.3 Primary Active Transporters
- 4.3.A Pyrophosphate Bond (ATP; GTP; P2) Hydrolysis-driven Active Transporters
- 4.3.A.1 The ATP-binding Cassette (ABC) Superfamily
- 4.3.A.2 The H+/Na+-translocating F-, V- and A-type ATPase (F-ATPase) Superfamily
- 4.3.A.3 The P-type ATPase (P-ATPase) Superfamily
- 4.3.A.4 The Arsenite-Antimonite (Ars) Efflux Family
- 4.3.A.5 The Type II (General) Secretory Pathway (IISP) Family
- 4.3.A.6 The Type III (Virulence-related) Secretory Pathway (IIISP) Family
- 4.3.A.7 The Type IV (Conjugal DNA-Protein Transfer) Secretory Pathway (IVSP) Family
- 4.3.D .Oxidoreduction-driven Active Transporters
- 4.3.A Pyrophosphate Bond (ATP; GTP; P2) Hydrolysis-driven Active Transporters
- 4.4 Group Translocators
- 4.S substrate
- 4.S.1 (D)-glucarate/galactarate
- 4.S.2 2-keto-3-deoxy-D-gluconate
- 4.S.3 3-hydroxyphenylpropionic acid
- 4.S.4 3-phenylpropionic acid
- 4.S.5 alkanesulfonate
- 4.S.6 alkanesulphonate
- 4.S.7 alklphosphonate
- 4.S.8 alkylphosphonate
- 4.S.9 allantoin/ion
- 4.S.10 allose/ribose
- 4.S.11 alpha-ketoglutarate
- 4.S.12 amino acid
- 4.S.13 amino acid/amide
- 4.S.14 ammonium
- 4.S.15 antibiotic
- 4.S.16 arabinose polymer
- 4.S.17 arginine
- 4.S.18 arginine/ornitine
- 4.S.19 arsenite
- 4.S.20 benzoate
- 4.S.21 beta-galactosidase/lactose and glucose
- 4.S.22 beta-glucoside
- 4.S.23 betaine/choline/glycine
- 4.S.24 betaine/choline/glycine transport protein
- 4.S.25 Ca
- 4.S.26 cadaverine/lysine
- 4.S.27 carnitine
- 4.S.28 cation
- 4.S.29 cellobiose/arbutin/salicin
- 4.S.30 cellobiose/salicin/arbutin
- 4.S.31 chloramphenicol
- 4.S.32 chloride
- 4.S.33 choline
- 4.S.34 citrate/succinate
- 4.S.35 colicin4
- 4.S.36 Cu
- 4.S.37 curli subunit
- 4.S.38 cyanate
- 4.S.39 cysteine
- 4.S.40 metabolites
- 4.S.41 cytosine
- 4.S.42 D-alanine/D-serine/glycine
- 4.S.43 D-galactonate
- 4.S.44 D-glucarate
- 4.S.45 D-glucose/trehalose
- 4.S.46 dicarboxylate
- 4.S.47 dipeptide
- 4.S.48 D-ribose
- 4.S.49 drug
- 4.S.50 D-xylose
- 4.S.51 enterochelin
- 4.S.52 acid
- 4.S.53 Fe
- 4.S.54 Fe++
- 4.S.55 dicitrate
- 4.S.56 enterobactin
- 4.S.57 hydroxamate
- 4.S.58 ferrichrome
- 4.S.59 formate
- 4.S.60 formate/oxalate
- 4.S.61 fosfidomycin/H
- 4.S.62 frucose
- 4.S.63 fructose
- 4.S.64 fucose
- 4.S.65 galactitol
- 4.S.66 galactose/H+
- 4.S.67 gamma-aminobutyrate
- 4.S.68 glucitol/sorbitol
- 4.S.69 gluconate
- 4.S.70 gluconate/L-idonate
- 4.S.71 glucose
- 4.S.72 glucose/maltose
- 4.S.73 glucuronide
- 4.S.74 acid
- 4.S.75 glutamate/aspartate
- 4.S.76 glutamine
- 4.S.77 glycerol
- 4.S.78 glycerol-3-P
- 4.S.79 transport
- 4.S.80 glycine/betaine/proline
- 4.S.81 colicins
- 4.S.82 H+
- 4.S.83 H+/acridine
- 4.S.84 H+/lactose/glucose
- 4.S.85 heme
- 4.S.86 phosphate
- 4.S.87 hexuronate
- 4.S.88 histidine
- 4.S.89 histidine/lysine/arginine/ornithine
- 4.S.90 homoserine/lactone
- 4.S.91 molecule
- 4.S.92 molecules
- 4.S.93 ion
- 4.S.94 ions
- 4.S.95 dicitrate
- 4.S.96 K+
- 4.S.97 K+/H+
- 4.S.98 lactate
- 4.S.99 lactose
- 4.S.100 L-arabinose
- 4.S.101 L-arabinose /H+
- 4.S.102 isopropyl-beta-D-thiogalactopyranoside
- 4.S.103 L-asparagine
- 4.S.104 lipooligosaccharides
- 4.S.105 lipopolysaccharide
- 4.S.106 lipoprotein
- 4.S.107 L-lactate
- 4.S.108 L-leucine/L-valine/L-iso-leucine
- 4.S.109 L-rhamnose/H
- 4.S.110 L-threonine/L-serine
- 4.S.111 lysine
- 4.S.112 lysine/arginine/ornithine
- 4.S.113 maltose
- 4.S.114 maltose/maltodextrin
- 4.S.115 mannitol
- 4.S.116 mannose
- 4.S.117 mellobiose
- 4.S.118 methionine
- 4.S.119 methylgalactoside/galactose
- 4.S.120 Mg++
- 4.S.121 Mg2+/Ni2+/Co2+
- 4.S.122 B17
- 4.S.123 Mn+/H+
- 4.S.124 molybdate
- 4.S.125 molybdenum
- 4.S.126 multidrug
- 4.S.127 multidrug/bicyclomycin
- 4.S.128 muropeptide
- 4.S.129 myo-inositor
- 4.S.130 Na+
- 4.S.131 Na+/ alanine/glycine
- 4.S.132 Na+/ H+
- 4.S.133 Na+/Ca+
- 4.S.134 Na+/dicarboxylate
- 4.S.135 Na+/glutamate/aspartate
- 4.S.136 Na+/H+
- 4.S.137 Na+/leucine/valine/iso-leucine
- 4.S.138 Na+/pantothenate
- 4.S.139 Na+/proline
- 4.S.140 Na+/serine/threonine
- 4.S.141 N-acetylgalactosamine
- 4.S.142 N-acetylglucosamine
- 4.S.143 Ni++
- 4.S.144 mononucleotide
- 4.S.145 nitrite
- 4.S.146 nucleoside
- 4.S.147 nucleoside/H+
- 4.S.148 oligopeptide
- 4.S.149 oligopeptides
- 4.S.150 p-aminobenzoyl-glutamate
- 4.S.151 Pb/Cd/Zn/Hg
- 4.S.152 peptide
- 4.S.153 phenylalanine
- 4.S.154 tyrosine
- 4.S.155 phosphate
- 4.S.156 polymyxin
- 4.S.157 potassium
- 4.S.158 proline
- 4.S.159 proline/betaine
- 4.S.160 protein
- 4.S.161 protein/DNA
- 4.S.163 putrescine
- 4.S.164 putrescine/ornithine
- 4.S.165 putrescine/ornitine
- 4.S.166 putrescine/spermidine
- 4.S.167 serine
- 4.S.168 shikimate/dehydroshikimate
- 4.S.169 sialic acid
- 4.S.170 S-methylmethionine
- 4.S.171 spermidine/putrescine
- 4.S.172 sucrose
- 4.S.173 sugar
- 4.S.174 sulfate
- 4.S.175 taurine
- 4.S.176 tellurite
- 4.S.177 thiamine
- 4.S.178 thiosulfate
- 4.S.179 thiosulfate/sulfate
- 4.S.180 threonine
- 4.S.181 trehalose
- 4.S.182 tripeptide
- 4.S.183 tryptophan
- 4.S.184 tyrosine
- 4.S.185 uracil
- 4.S.186 urasil
- 4.S.187 B12
- 4.S.188 water
- 4.S.189 xanthosine
- 4.S.190 xylose/H+
- 4.S.191 Zn
- 4.S.192 chrysobactin
- 4.S.193 achromobactin
- 4.S.194 acetate
- 4.S.195 2-O-alpha-mannosyl-D-glycerate
- 4.S.196 Zn(2+)
- 4.1 Channel-type Transporters
- 5 Cell processes
- 6 Cell structure
- 7 Location of gene products
- 8 extrachromosomal
- 9 DNA sites
- 10 hypothetical gene